WebTCGA Toolbox for R. GitHub Gist: instantly share code, notes, and snippets. WebAdd these tags to both VarScan and SomaticSniper VCFs. These are already implemented in "vcf2vcf --add-filter": LowTotalDepth - Less than 14 total reads in tumor, or less than 8 reads in normal. LowTumorSupport - Less than 3 allele supporting read (s) in tumor. HighNormalSupport - More than 2 allele supporting read (s) in the normal.
The Cancer Genome Atlas Program
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Gastrointestinal Stromal Tumor (GIST) Diagnosis - News-Medical.net
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